Summary of Sequencing Status

Preliminary Sequence Clones Submitted to GenBank Base pairs Submitted to GenBank
~750,000bp 211 29,573,817 bp
total finished sequence

Chromosome 10 - cv Nipponbare

BAC Clones Map Position (cM) Genetic Marker North overlapping clone South overlapping clone Current Status Date in Finishing Genbank Submission Accession Number Size (bp)
OJ1136_E01 1.1   OSJNBa0046L02 Finished 12/14/01 31 Jan 02 AC108883 113,000
OSJNBa0015O22 1.2 S14152 OSJNBa0065H03 OSJNBb0012A20 Finished 12/20/99 15 Jun 00 AC068654 189,000
OSJNBa0089D15 11.4   OSJNBb0015J03 Finished 8/7/00 30 Apr 01 AC078944 164,000
OSJNBb0015J03 11.4   OSJNBa0089D15 OSJNAb0015J03 Finished 3/4/02 29 Mar 02 AC116603 135,000
OSJNBb0081F12 11.4 OSJNAb0015J03 OSJNBa0071I20 Finished 4/17/01 6 Sep 01 AC090488 128,000
OSJNBa0071I20 11.4 C1757S OSJNBb0081F12 OSJNBa0061H20 Finished 8/1/00 17 Jun 02 AC074355 145,000
OSJNBa0061H20 11.4 OSJNBa0071I20 OSJNBa0011A24 Finished 11/2701 28 Feb 02 AC113337   136,000
OSJNBa0011A24 11.4 OSJNBa0061H20 OSJNBa0051J07 Finished 11/19/01 28 Feb 02 AC113336 176,000
OSJNBa0047G15 13.5 R2174 OSJNBa0051J07 OSJNBa0095J15 Finished 10/15/00 23 May 02  AC083944 166,000
OSJNBa0082N11 15.7   OSJNBa0047B15 Finished 4/20/01 28 Nov 01 AC091735 183,000
OSJNAa0082N11 spanner   OSJNBa0082N11 OSJNBb0047B19 Finished 5/2/02 6 May 02  AC120497

7,525
OSJNBb0047B19 15.7 OSJNAa0082N11   Finished 11/14/01 28 Feb 02 AC113339 137,000
OSJNBa0034E23 15.7 R2052 OSJNBa0093G03 OSJNBb0036B06 Finished N/A 7 Mar 01 AC022352 139,000
OSJNBb0036B06 15.7 R2052 OSJNBa0034E23 OSJNBb0079E01 Finished N/A 21 May 01 AC051624 148,000
OSJNBb0079E01 15.7   OSJNBb0036B06 OSJNBa0053D03 Finished 1/11/02 31 May 02 AC119149 132,000
OSJNBa0053D03 15.7 C489 OSJNBb0079E01 OSJNAa0053D03 Finished 8/19/00 21 Jan 02 AC021892 199,000
OSJNBa0004A10 15.7 OSJNAa0053D03 OSJNBa0065C16 Finished 8/28/01 29 Oct 01 AC098682 144,000
OSJNBa0065C16 16.5 R1261 OSJNBa0004A10 OSJNBa0093I09 Finished 9/25/00 30 May 01 AC074354 146,000
OSJNBa0093I09 16.5 OSJNBa0065C16 OSJNBa0073L20 Finished 4/30/01 27 Jul 01 AC090486 172,000
OSJNBa0027A14 17.1 OSJNAb0008A05 OJ1325_D05 Finished 12/20/01  11 Sep 02 AC119147  174,000
OJ1325_D05 17.1 OSJNBa0027A14 OSJNBa0015I18 Finished 11/28/01 21 Mar 02 AC115686 169,000
OSJNBa0015I18 17.1 OJA1325D05   Finished 4/27/01 12 Sep 01 AC090482 161,000
OSJNBa0050M22 17.5   OSJNBa0035F15 Finished 3/27/01 11 Jul 01 AC090483 145,000
OSJNBa0035F15 17.5 OSJNBa0050M22 OSJNBb0052C09 Finished 8/30/01  19 Aug 02 AC119148  138,000
OSJNBa0045C13 17.5 C148 OSJNBb0052C09 OSJNBb0078C13 Finished 8/1/00 30 Apr 01 AC079634 161,000
OSJNAb0078C13 spanner   OSJNBb0078C13 OSJNBb0023M11 Finished 5/13/02 31 May 02   AC123594  45,840
OSJNBb0023M11 18.6 OSJNAb0078C13 OSJNAb0023M11 Finished 7/10/01 21 Sep 01  AC092749 140,000
OSJNBb0075K12 18.6 OSJNAb0023M11 OSJNAb0075K12 Finished 7/11/01 23 Oct 01 AC092750 135,000
OSJNBa0058E19 22.3 OSJNBb0076H04 OSJNBa0073L01 Finished 10/1/00 12 Dec 00 AC083945 147,000
OJ1003_C07 22.3 OSJNBa0083M08 OJ1208_D02 Finished 12/11/01 28 Feb 02

  AC113335

 115,000
OJ1208_D02 22.3 OJ1003_C07 OJA1208D02 Finished 11/29/01 17 Jan 02 AC107314 120,000
OJ1341_F06 22.3 OJA1208D02 OSJNBa0091J06 Finished 2/11/02 28 Feb 02 AC116926    102,000
OSJNBa0091J06 23.1 OJ1341_F06 OSJNBa0095C06 Finished 12/20/01 28 Feb 02 AC113338 141,000
OSJNBa0095C06 23.1 S1856 OSJNBa0091J06   Finished 10/20/00 14 Aug 01 AC079935 156,000
OSJNBa0032N04 23.1   OSJNBa0019N10 Finished 12/11/01 08 Mar 02 AC114474  159,000
OSJNBa0019N10 23.1 OSJNBa0032N04 OSJNAa0019N10 Finished 6/26/01 17 Jan 02 AC092748 192,000
OSJNAa0019N10 spanner   OSJNBa0019N10 OSJNBb0091O09 Finished 5/10/02 12 Jun 02  AC124213  28,000
OSJNBa0094H10 23.1 OSJNBb0091O09 OSJNBa0094J09 Finished 9/18/00 17 Nov 00 AC080019 149,000
OSJNBa0094J09 23.1 R1629 OSJNBa0094H10 OSJNBb0061I18 Finished N/A 13 Sep 00 AC078839 168,000
OSJNBb0061I18 23.1 OSJNBa0094J09 OSJNBa0068A07 Finished 10/15/00 30 Jan 01 AC079936 143,000
OSJNBa0068A07 24.3 OSJNBb0061I18 OSJNBa0011L09 Finished 5/22/01 29 Jun 01 AC091734 155,000
OSJNBb0058B20 25.7 OSJNAa0011L09 OSJNBa0050N08 Finished 8/17/01 31 Jan 02 AC108884 156,000
OSJNBa0050N08 25.7 C961 OSJNBb0058B20 OSJNBa0044A10 Finished 1/4/00 19 Jan 01 AC021891 144,000
OSJNBa0044A10 25.7 OSJNBa0050N08 B1127H11 Finished 10/15/00 6 Jun 02 AC083943 169,000
B1127H11 26.1 near c961 OSJNBa0044A10 OSJNBb0044I14 Finished 5/20/03  11 Aug 03      53,374
OSJNBb0044I14 29.8 B1127H11 OSJNBa0060A14 Finished 3/25/01 30 Apr 01 AC090487 63,000
OSJNBa0060A14 29.8 OSJNBb0044I14   Finished 1/11/00 29 Jun 01 AC021893 151,000
OSJNBa0069E21 31.4   OSJNBa0061K21 Submitted (HTGS)      AC025044 110,000
OSJNBa0061K21 33.1 S10886 OSJNBa0069E21   Finished N/A 12 Apr 00 AC016780 112,000

Chromosome 3 - cv Nipponbare

BAC Clones Map Position (cM) Genetic Marker North overlapping clone South overlapping clone Current Status Date in Finishing Genbank Submission Accession Number Size (bp)
OSJNBb0079B22 1.1 -   OSJNAb0079B22 Finished 8/3/01

19 Oct 01

AC097627

125,000
OSJNAb0079B22 1.1   OSJNBb0079B22 OSJNBb0080O10 Finished 6/3/02

25 Jun 02

   AC125411

37,000
OSJNBb0080O10 1.1   OSJNAb0079B22 OSJNBa0009C08 Finished 1/23/02

31 May 02

AC118673

127,000
OJ1384D03 1.1   OSJNBa0009C08 OSJNBb0043C10 Sent to AGI 2/26/02    

102,000
OSJNBb0005F16 1.1   OSJNBb0043C10 OSJNBa0090O10 Sent to AGI 5/14/02      
OJ1263H11 2.5   OSJNBa0056G13 OJ1705B08 Sent to AGI 3/22/02     102,000
OJ1293G11 2.5   OJ1126B12 OJ1015F07 Finished 2/11/02

30 Apr 02

   AC119747  147,000
OSJNBa0003A09 10.9 C1279 OJ1006F06   Sent to AGI 2/27/02     148,000
OSJNBb0081A17 10.9 C1279   OSJNBa0083D24 Finished 7/9/02

30 Apr 03

AC137697

 134,000
OSJNBa0083D24 13.3   OSJNBb0081A17 OJ1172F09 Sent to AGI 2/27/02     121,000
OJ1172F09 13.3   OSJNBa0083D24 OSJNBa0067N01 Sent to AGI 4/30/02     111,000
OSJNBa0067N01 13.3 C725 OJ1172F09 OSJNBb0050N02 Finished 4/27/01

19 Jun 01

AC090485

 159,000
OSJNBa0038D20 13.3   OSJNBb0050N02 OSJNBa0016I15 Finished 7/9/02

27 Dec 02

AC137635

 165,000
OSJNBa0083G16 15.2   OJ1134F05 AJ1607A12 Sent to AGI 6/10/02     117,000
OSJNBa0015N19 17.9     OSJNBa0061L19 Sent to AGI 6/25/02      
OSJNBa0061L19 17.9 C25 OSJNBa0015N19 OSJNBa0050H14 Finished 7/17/01

30 Nov 01

AC090484

 153,000
OSJNBa0050H14 17.9   OSJNBa0061L19 OSJNBb0076N15 Sent to AGI 6/10/02      
OSJNBb0076N15 20.3   OSJNBa0050H14 OSJNBa0032G08 Sent to AGI 6/28/02      
OSJNBa0032G08 20.3 S2769 OSJNBb0076N15 OSJNBa0042J17 Finished 8/20/00

30 Apr 01

AC079633

122,000
OSJNBa0042J17 21.8   OSJNBa0032G08 OJ1217B09 Sent to AGI 6/18/02      
OJ1217B09 21.8   OSJNBa0042J17 OSJNBb0019D17 Sent to AGI 5/14/02      86,000
OSJNBb0019D17 24.4 S879 OJ1217B09   Finished 7/24/01

29 Mar 02

AC116604

129,000
OSJNBa0057M02 25.0     OSJNBb0058P18 Finished 5/20/03

15 Jul 03

  

19,123
OSJNBb0058P18 25.0 - OSJNBa0057M02 OSJNBa0091J11 Finished 1/7/02

27 Mar 02

AC116426

155,000
OSJNBa0091J11 25.0 - OSJNBb0058P18 OSJNBa0021H20 Finished 9/18/01

21 Mar 02

AC115687

181,000
OSJNBa0021H20 25.0   OSJNBa0091J11   Finished 5/20/03

 31 Aug  03

       53,160
OSJNBa0009J13 27.9     OJ1345H02 Finished  8/5/03   17 Sep 03       93,370
OJ1345H02 27.9   OSJNBa0020O24 OSJNBa0040M05 Finished 1/31/02

30 May 02

   AC123568

145,000
OSJNBa0040M05 27.9   OJ1345H02 OSJNBa0014O06 Finished 6/18/02

30 Aug 02

AC132214

153,000
OSJNBa0021B21 28.2 S12158 OSJNBa0014O06 OSJNBa016N22 Finished 8/14/01

5 Dec 01

AC104179

166,000
OSJNBa0016N22 28.2   OSJNBa0021B21   Finished  7/11/03

26 Aug 03

   

19,208
OSJNBa0049C20 36.1   OJ1175C11 OJ1081D05 Finished 7/15/02

27 Dec 02

AC137696

 136,000
OSJNBa0060E18 36.1 - OJ1081D05 OSJNBb0071C04 Finished 12/17/01

22 Apr 02

   AC118981

147,000
OSJNBb0071C04 36.1   OSJNBa0060E18 OSJNBb0042A11 Finished 8/29/02

28 Oct 02

   AC136136

126,000
OSJNBb0096L14 37.7 C706 OSJNBb0042A11 OSJNBb0078P24 Finished 6/18/02

23 Jul 02

   AC129008  131,000
OSJNBb0078P24 37.7 R944 OSJNBb0096L14 OSJNBa0030J04 Finished 1/23/02

20 Jun 02

AC118672

148,000
OSJNBa0085M22 40.3 R1868 OJ1664B11 OJ1041F02 Sent to AGI 6/24/02      
OSJNBa0032O19 42.7 S13802 OSJNBb0016G06 OSJNBb0014A21 Finished 10/4/01

17 Jan 02

AC107315

142,000
OSJNBb0014A21 44.1   OSJNBa0032O19 OSJNBa0002D01 Finished 10/10/02

27 Nov 02

AC137698

 134,000
OSJNBa0002D01 44.1 C614 OSJNBb0014A21 OSJNBa0009C19 Finished 10/15/00

31 Dec 01

AC083942

187,000
OSJNBa0009C19 44.1   OSJNBa0002D01 OSJNBa0044H10 Finished 10/10/02

9 Jan 03

AC137069

 131,000
OSJNBb0022M22 44.1   OSJNBa0013D02 OSJNBb0027B12 Finished 10/20/02

7 Jan 03

AC137074

 124,000
OSJNBb0027B12 44.1   OSJNBb0022M22 OSJNBb0078C05 Finished 10/10/02

10 Mar 03

AC137075

 127,000
OSJNBa0045E22 46.6   OSJNBb0078C05 OSJNBb0036D03 Finished 10/10/02

30 Apr 03

AC137072

 160,000
OSJNBb0036D03 46.9 - OSJNBa0045E22 OSJNBa0039F10 Finished 1/29/02

16 Aug 02

AC118670

128,000
OSJNBa0036G02 47.7 R1158 OSJNBa0039F10 OSJNBa0032G21 Finished 1/11/02

28 May 02

AC118668

153,000
OSJNBa0032G21 48.5   OSJNBa0036G02 OJ1275B08 Finished 9/11/02

31 Aug 03

AC137267

 187,621
OJ1275B08 48.5   OSJNBa0032G21 OJ1145F05 Finished 9/11/02

23 Oct 02

AC135908

 108,000
OJ1145F05 48.5   OJ1275B08 OSJNBa0042B10 Finished 9/11/02

26 Sep 02

   AC134769 127,000
OSJNBa0042B10 48.5   OJ1145F05 OSJNBb0011G21 Finished 10/10/02

30 Apr 03

AC137071

 145,000
OSJNBb0011G21 49.3 - OSJNBa0042B10 OSJNBb0085H08 Finished 1/23/02

31 Aug 02

AC118669

142,000
OSJNBb0085H08 49.3 R1862 OSJNBb0011G21 OSJNBa0032F22 Finished 1/7/02

15 Apr 02

   AC118340

126,000
OSJNBa0032F22 49.3    OSJNBb0085H08   Finished 5/20/03

17 Jul 03

  

10,656
OSJNBa0042L15 50.8 R3156 OSJNBa0005J15 OSJNBb0093J20 Finished 11/18/01

30 Apr 02

   AC119748

172,000
OSJNBb0093J20 50.8 - OSJNBa0042L15 OSJNBa0035J18 Finished 11/5/01

19 Jun 03

AC118674

148,000
OSJNBa0035J18 50.8   OSJNBb0093J20 OSJNBb0014I10 Finished 9/11/02

30 Dec 02

AC137070

162,000
OSJNBb0014I10 50.8  R3156 OSJNBa0035J18 OSJNBa0052J20 Sent to AGI 6/27/02      
OSJNBa0076E06 50.8 R3156 OSJNBa0052J20 OSJNBb0029K10 Finished 6/12/02

30 Aug 02

   AC132215 126,000
OSJNBb0029K10 55.8 R3126 OSJNBa0076E06 OSJNBb0098H14 Finished 10/20/02

27 Nov 02

AC137699

 135,000
OSJNBb0098H14 55.8 C269A OSJNBb0029K10 OJ1125B03 Sent to AGI 6/24/02      
OJ1125B03 56.3   OSJNBb0098H14 OSJNBa0030D15 Finished 8/29/02

30 Sep 02

   AC134885 125,000
OSJNBa0030D15 57.2   OJ1125B03 OSJNBb0050D18 Finished 7/15/02

16 Aug 02

   AC131175 151,000
OSJNBb0050D18 56.3 - OSJNBa0030D15   Sent to AGI 5/15/02    

114,000
OSJNBb0094H06 59.5 C1135   OSJNBa0006D11 Finished 8/2/01

30 May 02

AC118675

118,000
OJ1113A07 61.9   OSJNBa0006D11 OJ1739D07 Finished 9/11/02

9 Oct 02

   AC135257 151,000
OJ1739D07 61.9   OJ1113A07   Finished 9/11/02

30 Oct 02

   AC136284 149,000
OSJNBb0078O24 61.9 C582   OSJNBa0072G19 Sent to AGI 6/25/02      
OSJNBa0072G19 61.9   OSJNBb0078O24   Closure 10/20/02  

AC137599

  
OSJNBa0043L15 61.9     OSJNBb0005A11 Closure 10/20/02  

AC137598

  
OSJNBb0005A11 61.9 - OSJNBa0043L15   Finished 7/31/01

17 Dec 03

AC137073

160,000
OSJNBb0033D20 63.3     OSJNBa0048D11 Finished 7/1/02

17 Dec 02

AC137076

 128,000
OSJNBa0048D11 63.3 C730 OSJNBb0033D20 OJ1057D12 Finished 11/12/01

23 Jan 02

AC107619

162,000
OJ1057D12 63.3   OSJNBa0048D11 OSJNBa0022F22 Finished 9/3/02

23 Oct 02

   AC135907 161,000
OSJNBa0022F22 64.9 R2170 OJ1057D12 OSJNBb0012F18 Finished 10/20/02

12 Sep 03

AC137597

 144,268
OSJNBb0012F18 64.9 R2170 OSJNBa0022F22 OJ1047G10 Finished 2/14/02

30 Jun 02

AC125784

 122,000
OSJNBa0048F08 70.1 R2982 OJ1047G10 OSJNBb0004M10 Finished 2/26/01

17 Jan 02

AC091733

 155,000

Chromosome 11 - cv Nipponbare

BAC Clones Map Position (cM) Genetic Marker North overlapping clone South overlapping clone Current Status Date in Finishing Genbank Submission Accession Number Size (kbp)
OSJNBa0051B13 30.0       Finished 5/20/03

31 Jul 03

  AC123522 178,000
OSJNBa0037P04 30.5       Finished 5/20/03

31 Jul 03

  AC123521 34,257
OSJNBb0033E08 30.5       Finished 5/20/03

16 Jul 03

  AC123515 149,241
OSJNBa0034O04 30.5       Finished 5/20/03

31 Oct 03

  AC123520 164,882
OSJNBb0074K09 32.1       Finished 5/20/03

11 Aug 03

  AC123517 135,363
OSJNBb0050G15 32.1       Finished 5/20/03

30 Jun 03

  AC137989 152,000
OSJNAb0050G15 32.1       Finished 9/15/03

19 Nov 03

   6,156
OSJNBa0052C03 33.4       Finished 5/20/03

16 Jul 03

  AC123524 157,178
OSJNBa0033H01 77.4       Finished 11/11/03

  27 Feb 04

  AC134256

  178,233
OSJNBa0041J17 79.1

S4002S

     Finished 11/24/03

 27 Feb 04

  AC134925 148,831
OSJNBa0019A16 79.9       Finished 9/17/03

 26 Feb 04

 AC108223 175,425 
OSJNBa0038F07 80.2       Finished 9/17/03

 26 May 04

 AC108224  175,703
OSJNBa0041I05 80.5       Finished 11/20/03

 22 Jun 04

 AC134624  148,785
OSJNBa0084M23 80.5-84.3       Finished 11/20/03

 16 Jul 04

  AC137753 134,180
OSJNBa0038B22 80.5-84.3       Finished 11/7/03

 13 Apr 04

  AC136956  177,577
OSJNBa0074L11 88.7       Finished 8/20/03

31 Oct 03

AC137744 180,703
OSJNBb0041J18     Finished 1/1/04

31 Jul 04

AC137745 129,523
OSJNBa0017H17     Finished 1/1/04

30 Apr 04

AC144700 156,331
OSJNBb0026G02     Finished 1/1/04

27 May 04

AC120984 123,472
OSJNBa0088K21     Finished 1/1/04

27 Feb 04

AC120887 153,239
OSJNBa0060B06 85.7       Finished 11/20/03

 31 Mar 04

  AC136149 162,568
OSJNBa0060K21 85.7       Finished 11/20/03

 13 Apr 04

  AC137588 163,973
OSJNBa0017D19 91.4-97.3       Finished 8/20/03

19 Nov 03

 AC120884 142,015
P0038B07 99.2       Finished 8/20/03

 27 Jan 04

 AC109832  149,696
OSJNBa0030I15 99.2       Finished 11/20/03

 30 Jan 04

  AC125780 148,498 
OSJNBa0039F06 99.2-101.9       Finished 8/20/03

23 Sep 03

AC118346 133,022
OSJNBa0041L19 101.9-104.9       Finished 8/20/03

22 Oct 03

AC113249 155,086
OSJNBb0079P23 104.9       Finished 11/20/03

 30 Jun 04

 AC108872  111,924
P0313E01 104.9       Finished 11/20/03      5 Apr 04 AC145775 149,215 
OSJNBa0014E11 105.4       Finished 8/20/03

31 Dec 03

 AC137751 199,000
P0485F09 106.8       Finished 11/20/03

 13 Apr 04

  AC120888  161,276
OSJNBb0024E08 112.4       Finished 11/20/03

 13 Apr 04

 AC129226 131,946
OSJNBb0076M06 112.9       Finished 8/30/03

23 Oct 03

AC134924 133,581
OSJNBa0004D06 112.9       Finished 11/20/03

 8 Aug 04

 AC134922  157,547  
OSJNBa0064H09 112.9       Finished 11/20/03

 19 Jul 04

 AC135190  146,742

Chromosome 5 - cv Nipponbare

BAC Clones Map Position (cM) Genetic Marker North overlapping clone South overlapping clone Current Status Date in Finishing Genbank Submission Accession Number Size (kbp)
OSJNBa0060G17 49.4-52.7       Finished 9/15/03

26 Nov 03

 AC135420 174,000
OSJNBa0093E24 52.7       Finished 9/20/03

26 Nov 03

 AC136223 146,000
OJ1384A02 52.7-53.2       Finished   30 Jan 04 AC118286 100,251
OJ1122B08 52.7-53.2       Finished   22 Jul 04 AC105768 143,955
OJ1115B04 52.7-53.2       Finished   29 Jul 04 AC105259 95,383
OSJNBa0004B23 53.2       Finished 9/20/03 27 Jan 04 AC137606 153,136
P0680F01 53.2       Do Not Finish        
OSJNBa0037H06 53.5       Finished 10/20/03

 30 Jun 04

 AC119290 144,457 
OJ1037G10 53.5       Finished 11/21/03

 20 Jul 04

  AC104270   181,130
OSJNBa0032D15 53.5-54.3       Finished 10/5/03

11 Dec 03

 AC120989 161,000
OJ1171H02 53.5-54.3       Finished 11/10/03

16 Dec 03

AC104274 109,000
OSJNBa0009N21 53.5-54.3       Finished 9/20/03

29 Apr 04

 AC121362 164,925
P0537C11 53.5-54.3       Finished 11/21/03

23 Apr 04

   AC132489 146,677
OSJNBa0075J06 53.5-54.3       Finished 9/15/03

18 Dec 03

 AC136220 127,000
P0695G07 54.3       Do Not Finish        
OSJNBa0088M06 54.3       Finished 9/15/03

20 Nov 03

 AC135916 150,099
OSJNBa0038E22 54.3        Finished 11/6/03

31 Dec 03

   150,000
OSJNBa0093C16 54.3       Finished  

28 May 04

AC146338 206,612
OSJNBa0002L02 54.3       Finished  

28 May 04

AC145272 165,685
OSJNBa0022B03 54.3       Finished  

30 Mar 04

AC137612 151,814
OSJNBa0053F13 54.3       Finished 9/20/03

31 Oct 03

AC137615 149,538
OSJNBa0010H19 54.3       Finished 11/21/03

18 Dec 03

 AC137609 162,000
OSJNBb0069G11 54.3       Finished   27 Jan 04 AC137003 174,844
OSJNBa0034K10 54.3       Finished   30 Jun 04 AC137615 138,925
OSJNBa0037H03 54.3       Finished   30 Jul 04 AC136522 185,881
OSJNBb0061M13 54.3-54.6       Finished 11/21/03 27 Jan 04  AC137002  174,910
P0522C01 54.3-54.6       Finished 11/21/03 27 May 04 AC132488 136,120
OSJNBa0018H09 54.3-54.6       Finished 11/21/03 30 Jan 04 AC137610 155,329
P0690B12 54.6       Finished 1/1/04

31 Mar 04

 AC136229 135,319
P0479C09 54.6       Finished 1/1/04

31 Mar 04

 AC135923 156,776
P0014F09 54.6       Finished 1/1/04

13 Apr 04

 AC135919 151,345
P0018C06 54.6       Finished 1/1/04

24 Mar 04

 AC136523 179,695
OSJNBa0050A24 54.6       Finished 1/1/04

20 Apr 04

 AC144453 142,574
OSJNBa0025G07 54.6       Finished 1/1/04

26 Feb 04

 AC144452 167,136
OSJNBa0008E07 54.6       Finished 1/1/04

30 Mar 04

 AC144736 146,679
B1024B07 54.6       Library        
P0587F01 54.6       Closure        
OSJNBa0030J05 54.6       Finished 1/1/04

30 Mar 04

 AC137746 147,352
P0012A07 54.6       Finished   

27 Apr 04

AC134345 136,858
OSJNBa0034M22 54.6       Finished   

30 Apr 04

AC136521 149,435
P0508G08 54.6       Finished  

20 Apr 04

AC130726 141,383
P0411C02 54.6       Finished   

30 Apr 04

AC135922 145,676
OSJNBa0082F22 54.6       Finished   

29 Apr 04

AC135915 176,038
OJ1240E09 54.6       Finished   

20 Apr 04

AC093955 118,742
OJ1583A05 54.6       Finished    

26 Apr 04

AC096707 126,987
OJ1057C01 54.6       Finished 12/8/03

27 Feb 04

 AC093953 142,752
OJ1234D05 54.6-55.4       Finished  

27 Apr 04

AC098572 107,476
P0671E09 54.6-55.4       Finished 1/1/04

26 May 04

 AC135430 158,472
OSJNBb0052F16 60.7       Finished 1/1/04

27 Feb 04

 AC144742 162,082
OSJNBa0077J17 60.7       Finished 1/1/04

11 Mar 04

 AC136221 141,598
OJ1320D10 60.7-62.7       Finished 1/1/04

19 Apr 04

 AC104711 134,183
OJ1537B05 60.7-62.7       Finished 1/1/04

31 Mar 04

 AC104281 129,890
OSJNBa0036C12 62.7       Finished 1/1/04

31 Mar 04

 AC121363 145,517

Chromosome 9 - cv Nipponbareclone

BAC Clones Map Position (cM) Genetic Marker North overlapping clone South overlapping clone Current Status Date in Finishing Genbank Submission Accession Number Size (kbp)
OSJNBa0087J09 69.5       Finished  

31 Aug 04

 AC108761 153,351
OSJNBa0046G06 69.5       Closure        
OSJNBa0066E19 72.1       Finished   29 Jul 04 AC108758 145,575
OSJNBa0005C18 73.6       Finished   28 Feb 05 AC099403 146,702
OSJNBa0056P13 74.7       Finished   31 Dec 04 AC108757 179,923
OSJNBa0019D02 74.7       Finished   25 Aug 04 AC099404 154,692
OSJNBb0004A05 74.7       Finished   30 Jul 04 AC108763 157,913
OSJNBa0010B06 75       Finished  

24 Jun 04

 AC108753 129,310
OSJNBa0094K23 77.2       Finished  

30 Apr 04

 AC138007 167,482
OSJNBa0065A15 77.7       Finished   

30 Apr 04

 AC137594 168,806
OSJNBa0028C22 77.7-78.0       Finished   

26 May 04

 AC108755 154,228
OSJNBb0029L15 72.1       Do Not Finish      
OSJNBa0010L05 77.7       Do Not Finish        
OSJNBa0074B03 77.7-78.0       Do Not Finish        

Other Chromosomes - cv Nipponbare

BAC Clones Map Position (cM) Genetic Marker Current Status Date in Finishing Genbank Submission Accession Number Size (kbp)
OSJNBa0084C09 3_   Finished 11/20/99 25 Jan 01 AC016781 151,000
OSJNBa0049O12 2_147.3   Finished 4/15/00 26 Jun 01  AC069158 155,000
OSJNBa0042K08 ?   Finished 9/20/00 30 Nov 01 AC083751 164,000
71K05     Finished   19 Jan 05 AC155918 32,941
5D12     Finished   27 Jan 05 AC156495 88,500
OSJNBb0056O04 unanchored - mapped to chr.4   Finished   16 Feb 05 AC157500 90,825
OSJNBb0013E09 unanchored   Finished   28 Feb 05 -- 54,682
OSJNBb0064O05 unanchored   Finished
28 Feb 05 -- 28,847

Other Areas of Interest

BAC clone

 Location Status Accession Number Submission Date Size
10N6 cv Tequing - ChromosomeV Finished AC016779 18 Apr 03 140,234
10P20 cv Lemont - Chromosome I Finished AC011806 16 Oct 99 105,198

History of Submissions to GenBank

Number Clone Size Accession Number Submission Date
1 10P20 105,198 AC011806 16 Oct 99
2 61K21 112,721 AC016780 12 Apr 00
3 15O22 189,349 AC068654 16 Jun 00
4 94J09 168,192 AC078839 14 Sep 00
5 94H10 149,654 AC080019 17 Nov 00
6 58E19 147,719 AC083945 12 Dec 00
7 50N08 144,593 AC021891 19 Jan 01
8 84C09 151,293 AC016781 25 Jan 01
9 61I18 143,163 AC079936 30 Jan 01
10 34E23 139,398 AC022352 07 Mar 01
11 89D15 164,679 AC078944 30 Apr 01
12 45C13 161,250 AC079634 30 Apr 01
13 32G08 122,052 AC079633 30 Apr 01
14 44I14 63,206 AC090487 30 Apr 01
15 36B06 148,263 AC051624 21 May 01
16 65C16 146,391 AC074354 30 May 01
17 67N01 159,636 AC090485 19 Jun 01
18 49O12 155,154 AC069158 26 Jun 01
19 60A14 151,343 AC021893 29 Jun 01
20 68A07 155,843 AC091734 29 Jun 01
21 50M22 145,417 AC090483 11 Jul 01
22 93I09 172,434 AC090486 27 Jul 01
23 95C06 156,159 AC079935 14 Aug 01
24 81F12 128,388 AC090488 6 Sep 01
25 15I18 161,479 AC090482 12 Sep 01
26 23M11 138,668   AC092749  21 Sep 01
27 79B22 125,217   AC097627 19 Oct 01
28 75K12 134,933 AC092750 23 Oct 01
29 04A10 144,271

 AC098682

 29 Oct 01
30 82N11 183,345 AC091735 28 Nov 01
31 61L19 153,322 AC090484 30 Nov 01
32 42K08 164,628 AC083751 30 Nov 01
33 21B21 166,777 AC104179 5 Dec 01
34 02D01 187,589 AC083942 31 Dec 01
35 OJ1208D02 120,132   AC107314 17 Jan 02
36 19N10 192,267 AC092748 17 Jan 02
37 48F08 155,790 AC091733 17 Jan 02
38 32O19 142,248  AC107315 17 Jan 02
39 53D03 199,113 AC021892 21 Jan 02
40 48D11 158,911  AC107619 23 Jan 02
41 OJ1136E01 113,856   AC108883   31 Jan 02
42 58B20 156,232

  AC108884    

 31 Jan 02
43 61H20 135,874 AC113337 28 Feb 02
44 47B19 137,015   AC113339 28 Feb 02
45 11A24 176,826  AC113336  28 Feb 02
46 OJ1341F06 102,520 AC116926 28 Feb 02
47 91J06 141,911   AC113338 28 Feb 02
48 OJ1003C07 115,188 AC113335 28 Feb 02
49 32N04 159,447 AC114474 08 Mar 02
50 OJ1325D05 169,500  AC115686  21 Mar 02
51 91J11 181,163   AC115687 21 Mar 02
52 58P18 155,037 AC116426 27 Mar 02
53 19D17 129,658

AC116604  

 29 Mar 02
54 15J03 135,940  AC116603 29 Mar 02
55 85H08 126,708 AC118340 15 Apr 02
56 60E18 147,983 AC118981 22 Apr 02
57 42L15 172,475  AC119748  30 Apr 02
58 OJ1293G11 147,806 AC119747 30 Apr 02
59 49B15 7,525 AC120497 6 May 02
60 47G15 166,474 AC083944 23 May 02
61 36G02 153,308 AC118668 28 May 02
62 94H06 118,075 AC118675 30 May 02
63 OJ1345H02 145,290   AC123568  30 May 02
64 25K03 45,840

 AC123594

 31 May 02
65 79E01 132,870 AC119149 31 May 02
66 80O10 127,917 AC118673 31 May 02
67 44A10 169,270 AC083943 6 Jun 02
68 71I24 26,704 AC124213 12 Jun 02
69 71I20 145,510 AC074355 17 Jun 02
70 78P24 148,268 AC118672 20 Jun 02
71 47G02 37,727  AC125411 25 Jun 02
72 12F18 122,903  AC125784 30 Jun 02
73 96L14 131,142   AC129008 23 Jul 02
74 30D15 151,972  AC131175 16 Aug 02
75 36D03 128,500 AC118670 16 Aug 02
76 35F15 138,335 AC119148 19 Aug 02
77 76E06 126,323  AC132215 30 Aug 02
78 40M05 153,126  AC132214 30 Aug 02
79 11G21 142,401 AC118669 31 Aug 02
80 27A14 174,859 AC119147 11 Sep 02
81 OJ1145F05 127,348 AC134769   26 Sep 02
82 OJ1125B03 124,550   AC134885   30 Sep 02
83 OJ1113A07 151,173  AC135257 9 Oct 02
84 OJ1275B08 108,833 AC135908 23 Oct 02
85 OJ1057D12 161,676   AC135907 23 Oct 02
86 71C04 126,078   AC136136 28 Oct 02
87 OJ1739D07 149,539 AC136284 30 Oct 02
88 29K10 135,940   AC137699 27 Nov 02
89 14A21 134,014   AC137698 27 Nov 02
90 33D20 128,707 AC137076 17 Dec 02
91 38D20 165,395 AC137635 27 Dec 02
92 49C20 136,098 AC137696 27 Dec 02
93 35J18 162,711 AC137070 30 Dec 02
94 22M22 124,166 AC137074 7 Jan 03
95 09C19 131,709 AC137069 9 Jan 03
96 27B12 127,426 AC137075 10 Mar 03
97 10N6 140,234 AC016779 18 Apr 03
98 81A17 134,821 AC137697 30 Apr 03
99 42B10 145,543 AC137071 30 Apr 03
100 45E22 160,920 AC137072 30 Apr 03
101 93J20 148,635 AC118674 19 Jun 03
102 21H20 53,160    31 Aug 03
103 50G15 152,556 AC137989 30 Jun 03
104 57M02 19,123   15 Jul 03
105 33E08 149,241 AC123515 16 Jul 03
106 52C03 157,178 AC123524 16 Jul 03
107 32F22 10,656    17 Jul 03
108 51B13 178,000 AC123522 31 Jul 03
109 37P04 34,257 AC123521 31 Jul 03
110 B1127H11 53,374    11 Aug 03
111 74K09 135,363 AC123517 11 Aug 03
112 16N22 19,208     26 Aug 03
113 32G21 187,621 AC137267 31 Aug 03
114 22F22 144,268 AC137597 12 Sep 03
115 09J13 147,205    17 Sep 03
116 39F06 133,022 AC118346 23 Sep 03
117 41L19 155,086 AC113249 22 Oct 03
118 76M06 133,581 AC134924 23 Oct 03
119 53F13 149,538 AC137615 31 Oct 03
120 74L11 180,703 AC137744 31 Oct 03
121 34O04 164,882 AC123520 31 Oct 03
122 Ab0050G15 6,156   19 Nov 03
123 17D19 142,015 AC120884 19 Nov 03
124 88M06 150,099 AC135916 20 Nov 03
125 60G17 174,948 AC135420 26 Nov 03
126 93E24 146,492 AC136223 26 Nov 03
127 32D15 161,968 AC120989 11 Dec 03
128 OJ1171H02 109,968 AC104274 16 Dec 03
129 05A11 168,219 AC137073 17 Dec 03
130 18H09 162,902 AC137609 18 Dec 03
131 75J06 127,052 AC136220 18 Dec 03
132 38E22 150,766 AC132484 31 Dec 03
133 14E11 199,348 AC137751 31 Dec 03
134 P0038B07 149,696 AC109832 27 Jan 04
135 4B23 153,136 AC137606 27 Jan 04
136 61M13 174,910 AC137002 27 Jan 04
137 69G11 174,844 AC137003 27 Jan 04
138 OJ1384A02 100,251 AC118286 30 Jan 04
139 18H09 155,329 AC137610 30 Jan 04
140 30I15 148,498 AC125780 30 Jan 04
141 19A16 175,425 AC108223 26 Feb 04
142 25G07 167,136 AC144452 26 Feb 04
143 52F16 162,082 AC144742 27 Feb 04
144 OJ1057C01 142,752 AC093953 27 Feb 04
145 41J17 148,831 AC134925 27 Feb 04
146 88K21 153,239 AC120887 27 Feb 04
147 33H01 178,233 AC134256 27 Feb 04
148 77J17 141,598 AC136221 11 Mar 04
149 P018C06 179,695 AC136523 24 Mar 04
150 8E07 146,679 AC144736 30 Mar 04
151 22B03 151,814 AC137612 30 Mar 04
152 30J05 147,352 AC137746 30 Mar 04
153 60B06 162,568 AC136149 31 Mar 04
154 OJ1537B05 129,890 AC104281 31 Mar 04
155 36C12 145,517 AC121363 31 Mar 04
156 P0690B12 135,319 AC136229 31 Mar 04
157 P0479C09 156,776 AC135923 31 Mar 04
158  P0313E01 149,215 AC145775 5 Apr 04
159 38B22 177,577 AC136956 13 Apr 04
160 60K21 153,973 AC137588 13 Apr 04
161 P0485F09 161,276 AC120888 13 Apr 04
162 24E08 131,946 AC129226 13 Apr 04
163 P0014F09 151,345 AC135919 13 Apr 04
164 OJ1320D10 134,183 AC104711 19 Apr 04
165 P0508G08 141,383 AC130726 20 Apr 04
166 OJ1240E09 118,742 AC093955 20 Apr 04
167 50A24 142,574 AC144453 20 Apr 04
168 P0537C11 146,677 AC132489 23 Apr 04
169 OJ1583A05 126,987 AC096707 26 Apr 04
170 OJ1234D05 107,476 AC098572 27 Apr 04
171 P0012A07 136,858 AC134345 27 Apr 04
172 82F22 176,038 AC135915 29 Apr 04
173 9N21 164,925 AC121362 29 Apr 04
174 34M22 149,435 AC136521 30 Apr 04
175 P0411C02 145,676 AC135922 30 Apr 04
176 17H17 156,331 AC144700 30 Apr 04
177 94K23 167,482 AC138007 30 Apr 04
178 65A15 168,806 AC137594 30 Apr 04
179 38F07 175,703 AC108224 26 May 04
180 28C22 154,228 AC108755 26 May 04
181 P0671E09 158,472 AC135430 26 May 04
182 26G02 123,472 AC120984 27 May 04
183 P0522C01 136,120 AC132488 27 May 04
184 02L02 165,685 AC145272 28 May 04
185 93C16 206,612 AC146338 28 May 04
186 41I05 148,785 AC134624 22 Jun 04
187 10B06 129,310 AC108753 24 Jun 04
188 79P23 111,924 AC108872 30 Jun 04
189 34K10 138,925 AC137615 30 Jun 04
190 37H06 144,457 AC119290 30 Jun 04
191 37H03 185,881 AC136522 10 Jul 04
192 84M23 134,180 AC137753 16 Jul 04
193 64H09 146,742 AC135190 19 Jul 04
194 OJ1037G10 181,130 AC104270 20 Jul 04
195 OJ1122B08 143,955 AC105768 22 Jul 04
196 OJ1115B04 95,383 AC105259 29 Jul 04
197 66E19 145,575 AC108758 29 Jul 04
198 04A05 157,913 AC108763 30 Jul 
199 41J18 129,523 AC137745 31 Jul 
200 04D06 157,547 AC134922 10 Aug 04
201 19D02 154,692 AC099404 25 Aug 04
202 87J09 153,351 AC108761 31 Aug 04
203 56P13 179,923 AC108757 31 Dec 04
204 71K05 32,941 AC155918 19 Jan 05
205 5D12 88,500 AC156495 27 Jan 05
206 56O04 90,825 AC157500 16 Feb 05
207 13E09 54,682 -- 28 Feb 05
208 64O05 28,847 -- 28 Feb 05
209 5C18 146,702 AC099403 28 Feb 05
210 6E22 128,256 -- 11 Mar 05
211 46G16 159,967 AC108756 30 Apr 05

Last updated on May 16, 2005